I am quite surprised to know that JMS can’t send RFH2 header for Pub/Sub using MQSI. Even though MQSI is used for Pub/Sub, there won't be any specific advantage from base MQ Pub/Sub.
Extract from IBM Redbook on Pub/Sub..
JMS: by default, JMS generates a MQRFH1 header and also embeds a
MQRFH2 header before the payload. Although MQRFH2 headers are
created by a JMS application, it is not possible to use such MQSeries
Integrator advantages as content filtering because these possibilities are not included in the JMS standard. The MQRFH2 header is used here by JMS for
compliance with the JMS Message Interface.
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