Do you have a flow built in WMB and would like to invoke it from a Java app? If so just form an MQ message and put it to the flows input Q.
or....
Are you trying to put Java in your flow? In which case you can call a jar from ESQL or use a java compute node to contain your Java code. You could get the java to write to a q but from within WMB but i'm not sure why you would want to do this when you have nice MQOuput / MQReply nodes provided by WMB.
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