Look at some of the threads regarding PCF commands and .net. You can use PCF commands to query the list of queues.
Summary - PCF support is in .net but undocumented. It is also broken at fixpack 5 and might work to suffice the problem you are looking at but probably wont (although there is a fix from IBM and it can be made to work). 'Supported' is questionable at the moment, but it should be possible to get this working. Alternatively I would expect that fix to go into fixpack 6 so wait until that ships (cant say when, but not this year!)
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