This should (probably) be a minor tweak to the paths you are specifying in your ESQL assignment/select statements. Can you show us the ESQL that you are using to get from source to target?
Easiest way of doing this is probably by directly indexing your code. When you add in a way like this:
SET I = 1 ;
some while loop
SET OutputRoot.XML.CNT_TAG[1].Weight[I] = ...
SET OutputRoot.XML.CNT_TAG[1].Weight[I] = ...
...
SET I = I + 1;
end your while loop
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