Is there anyway that the MRM gets modified when creating a blob.
No - as far as I'm aware, the ASBITSTREAM function is a read-only operation on the message tree. It certainly will not delete your message tree.
Quote:
After this statement my first field in my OutputRoot.MRM gets set to NULL
Are you quite certain that OutputRoot.MRM was non-null before the statement was executed, and null immediately afterwards? If you have been using the flow debugger, it might be worth double-checking the situation using a couple of trace nodes in your flow
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